Protein detail
OTU1
Ubiquitin thioesterase OTU1 (EC 3.4.19.12) (DUBA-8) (HIV-1-induced protease 7) (HIN-7) (HsHIN7) (OTU domain-containing protein 2)
Protein symbol OTU1 | UniProt ID | EVMP score 0.50 |
Frequency 8 | Transmembrane count | Protein classification EnzymesPredicted intracellular proteins |
Basic Information
Protein Names
Ubiquitin thioesterase OTU1 (EC 3.4.19.12) (DUBA-8) (HIV-1-induced protease 7) (HIN-7) (HsHIN7) (OTU domain-containing protein 2)
Protein Class
EnzymesPredicted intracellular proteins
Protein Function
- Enzymes
- Predicted intracellular proteins
- ENZYME proteins:Hydrolases
Ensembl
Entrez Gene Symbol
Gene Synonym
DKFZp451J1719DUBA8OTUD2
Gene Description
YOD1 deubiquitinase
Chromosome
1
Position
207043849-207052980
Frequency
8
EVMP Score
0.50
Fluorescence & Localization
Tissue Specificbone marrowCell SpecificErythrocyte progenitors
Function & Pathway
Protein Function
- Enzymes
- Predicted intracellular proteins
- ENZYME proteins:Hydrolases
Cellular Component
Molecular Function
Biological Process
Reactome
Mediation Categories
Fusion and delivery mediationMetabolism mediation
Relations & Evidence
Enzyme-Mediated Modification
0 records.
Ligand-Receptor Signaling
4 records.
| Category | Parent | Database | Transmitter | Receiver | Secreted | Plasma Membrane (Transmembrane) | Plasma Membrane (Peripheral) |
|---|---|---|---|---|---|---|---|
| intracellular | intracellular | ComPPI | No | No | No | No | No |
| intracellular | intracellular | GO_Intercell | No | No | No | No | No |
| intracellular | intracellular | UniProt_location | No | No | No | No | No |
| intracellular | intracellular | OmniPath | No | No | No | No | No |
Regulatory Interaction Network
0 records.
Protein Complex Composition
27 records.
| Component Name | Component Gene Symbols | Component UniProt ID | Stoichiometry | Database | Database IDs | References |
|---|---|---|---|---|---|---|
| CREBBP-KAT2B-MYOD1 complex | CREBBPKAT2BMYOD1 | P15172Q92793Q92831 | 0:0:0 | CORUM | CORUM:2641 | 9659901 |
| MYOD/E12E47 | MYOD1TCF3 | P15172P15923 | 1:1 | SIGNORCompleat | Compleat:HC550SIGNOR:SIGNOR-C127 | 9184158 |
| MYOD/E2-2 | MYOD1TCF4 | P15172P15884 | 0:0 | SIGNOR | SIGNOR:SIGNOR-C129 | |
| MYOD/HEB | MYOD1TCF12 | P15172Q99081 | 0:0 | SIGNOR | SIGNOR:SIGNOR-C128 | |
| MYOD1/SWI/SNF complex | ACTL6AARID1AARID1BARID2MYOD1PBX1SMARCA4SMARCB1SMARCC1SMARCC2SMARCD1SMARCE1 | O14497O96019P15172P40424P51532Q12824Q68CP9Q8NFD5Q8TAQ2Q92922Q969G3Q96GM5 | 0:0:0:0:0:0:0:0:0:0:0:0 | SIGNOR | SIGNOR:SIGNOR-C93 | |
| VCP-YOD1 AAA ATPase complex | MYOD1VCP | P15172P55072 | 1:1 | ComplexPortal | intact:EBI-46424859 | 36825201198187071475529228819009 |
| p300/CBP-PCAF-MyoD complex | CREBBPEP300KAT2BMYOD1 | P15172Q09472Q92793Q92831 | 1:1:1:1 | Compleat | Compleat:HC462 | 9659901 |
| tRNA-intron endonuclease complex | MYOD1TSEN2TSEN34TSEN54 | P15172Q7Z6J9Q8NCE0Q9BSV6 | 1:1:1:1 | Compleat | Compleat:HC2585 | 9200603 |
| CLP1EEFSECGAKMYOD1TSEN2TSEN34TSEN54UBC | O14976P0CG48P15172P57772Q7Z6J9Q8NCE0Q92989Q9BSV6 | 1:1:1:1:1:1:1:1 | NetworkBlastCompleat | Compleat:HC5305 | ||
| CLP1GAKMYOD1TSEN2TSEN34TSEN54TUFM | O14976P15172P49411Q7Z6J9Q8NCE0Q92989Q9BSV6 | 1:1:1:1:1:1:1 | NetworkBlastCompleat | Compleat:HC3988 |
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Isolation & Detection Technology
1 record.
| EV Isolation Method | Detection Method | Number of References | References |
|---|---|---|---|
| Differential Ultracentrifugation | Western blottingFlow cytometry | 1 | 38321535 |
Sequence, Structure & Domains
Sequences
Length
348
Mass
38,322
Sequence
MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVLQGLSSRTRVRELQGQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLIIEEDQTRPRSSPAFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV
Alternative Products
Event=Alternative splicing; Named isoforms=2; Name=1; IsoId=Q5VVQ6-1; Sequence=Displayed; Name=2; IsoId=Q5VVQ6-2; Sequence=VSP_024122
Alternative Sequence
1..61; MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVLQ -> METLHIIYSEAKSFTVE (in isoform 2)
3D Structural Models
Turn
194..196; 241..244; 250..252
Helix
138..140; 160..169; 176..178; 179..192; 199..202; 206..213; 222..232; 292..308
Beta Strand
148..151; 215..217; 234..240; 245..249; 256..263; 268..274; 276..280; 285..287
3D Structure
X-ray crystallography (3)
Domain & Motif Annotations
Compositional Bias
1..11; Basic residues
Zinc Finger
318..342; C2H2-type
Domain (CC)
The UBAX-like region mediates the interaction with VCP. According to PubMed:19818707, it corresponds to a UBX domain, which is a hallmark for VCP-associated proteins. However, no canonical UBX is detected by prediction tools such as Pfam or PROSITE.; DOMAIN: The C2H2-type zinc finger mediates specificity for 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains but not for 'Lys-11'-linked ubiquitin chains. Selectivity for 'Lys-11'-linked ubiquitin chains is provided by recognition of the sequence surrounding 'Lys-11' in ubiquitin. The S2 site region provides specificity for longer 'Lys-11'-linked ubiquitin chains (PubMed:23827681).
Domain (FT)
149..274; OTU
Region
1..39; Disordered; 50..128; UBX-like; 154..160; Cys-loop; 213..223; Variable-loop; 263..267; His-loop; 291..296; S2 site